Type 2 diabetes (T2D) is a growing worldwide health problem. Increased blood sugars and a corresponding increase in the production of the hormone insulin, which functions to lower blood sugar are risk factors for T2D development. However, it has been shown that everyone has an individual response to the food and the production of differing levels of blood sugar and insulin when eating the same meals has been shown. This secondary analysis of a 12-week randomised control trial of 155 individuals aimed to determine relationships between gut microbiota composition and the glucose response to high and low glycaemic index Mediterranean diets. The results identified two distinct types of response amongst the participants. Cluster A individuals had a lower but more rapid glucose response following food and were deemed to have a better glucose control than cluster B individuals. The clusters also differed in the gut microbiota composition. Cluster A had a higher proportion of Clostridium sensu stricto 1 and a lower proportion of Blautia, than cluster B. It was concluded that the glucose response to a standardised meal can differ between individuals and are associated with differing gut microbiota and risk for T2D. This study could be used by healthcare professionals to understand that diet recommendations are not one size fits all and that the recommendation of certain diets may have differing success. Understanding and differentiating individuals and tailor making recommendations may be of benefit, however further understanding is required on different glucose responses following a meal.